The anime takes place in a world that long ago featured the existence of magic, but has long since lost that ability. The story begins when the very normal high school student Mangetsu Kohinata meets Shingetsu Ernesta Fukami, who has migrated back to Japan from Germany, on a night with a full moon.

Arslan is the heir apparent of Pars, a strong nation that sits at the hear of the trade route connecting the East and the West. When the pagan nation of Lusitania begins an invasion of Pars, the timid Arslan is confronted with battle for the first time. His worst anxieties are realized the Parsian army falls for a Lusitanian stratagem and are routed. He barely escapes with his life, thanks to the loyal and indomitable warrior Daryun. Together they will stand against the invasion and the cruelties of fate that are about to blow down on Pars.

A floating space without gravity where an infinite number of lights shine in different colors: The “Box of Wisdom.” Inside of this box, there are multiple worlds, multiple timelines, and there used to be many different people. This is where Dual and Dorothy were fighting with enemies called “Viruses.” Worlds infected by viruses must be erased. That is the duty, the job of these girls. However, one day, Dual and Dorothy feel the presence of a new Virus. Arriving at the scene, they see a girl being attacked by Viruses. After saving the girl, the duo wait for her to awaken so they can ask who she is, where she came from, and where she is going. Finally, when the girl opened her eyes, she gave her name, Rimo, and whispered only one sentence… “I must return to the flower patch…”

Eijun Sawamura is a pitcher who joins an elite school with a brilliant catcher named Kazuya Miyuki. Together with the rest of the team, they strive for Japan’s storied Koushien championships through hard work and determination.

In the story, the seasons have changed and it will soon be the second spring. Tatsuya and Miyuki have finished their first year at First Magic High School and are on their spring break. The two go to their villa on the Ogasawara Island archipelago. After only a small moment of peace a lone young woman named Kokoa appears before them. She has abandoned the Naval base and she tells Tatsuya her one wish.